I'm having similar issues, I have an always on Debian server, two Windows desktop, one Windows laptop, all running 2.0.128 the file being rolled back comes from the laptop I always shutdown desktops when I stop using them, but with the laptop I just close the lid so it sleeps. I think it might be related. BTW: the history interface is a major PITA to use, at least show which directory does the entry belong to, option to show absolute time stamps, and a search/filter. by googling I found similar issues was fired two years ago, I'm losing faith in this product, switching back to git.