After some testing, restarts, pausing, device reboots and such... I found that when I modified the file on the device that kept over writing with the old copy and let that sync that I was able to make changes and sync normally from all the other devices. Of all the folders that I had synced it only affected that one folder and not the others. It is the folder that I use most often and the only one where tiddlywiki replaces itself, maybe that has something to do with the message about deletion that I seen earlier. I also noticed that all the changed files that I thought were being over written were actually being moved to the .sync/Archive folder so I didn't really lose anything when the older file kept coming back. Everything seems to work fine now but I'd still like to know if there is a solution for future reference. Jaa~